fast inference
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Unscrambling disease progression at scale: fast inference of event permutations with optimal transport
Disease progression models infer group-level temporal trajectories of change in patients' features as a chronic degenerative condition plays out. They provide unique insight into disease biology and staging systems with individual-level clinical utility. Discrete models consider disease progression as a latent permutation of events, where each event corresponds to a feature becoming measurably abnormal. However, permutation inference using traditional maximum likelihood approaches becomes prohibitive due to combinatoric explosion, severely limiting model dimensionality and utility. Here we leverage ideas from optimal transport to model disease progression as a latent permutation matrix of events belonging to the Birkhoff polytope, facilitating fast inference via optimisation of the variational lower bound. This enables a factor of 1000 times faster inference than the current state of the art and, correspondingly, supports models with several orders of magnitude more features than the current state of the art can consider. Experiments demonstrate the increase in speed, accuracy and robustness to noise in simulation.
Conditional Adapters: Parameter-efficient Transfer Learning with Fast Inference
We propose Conditional Adapter (CoDA), a parameter-efficient transfer learning method that also improves inference efficiency. CoDA generalizes beyond standard adapter approaches to enable a new way of balancing speed and accuracy using conditional computation.Starting with an existing dense pretrained model, CoDA adds sparse activation together with a small number of new parameters and a light-weight training phase.Our experiments demonstrate that the CoDA approach provides an unexpectedly efficient way to transfer knowledge.Across a variety of language, vision, and speech tasks, CoDA achieves a 2x to 8x inference speed-up compared to the state-of-the-art Adapter approaches with moderate to no accuracy loss and the same parameter efficiency.
Low-Rank Constraints for Fast Inference in Structured Models
Structured distributions, i.e. distributions over combinatorial spaces, are commonly used to learn latent probabilistic representations from observed data. However, scaling these models is bottlenecked by the high computational and memory complexity with respect to the size of the latent representations. Common models such as Hidden Markov Models (HMMs) and Probabilistic Context-Free Grammars (PCFGs) require time and space quadratic and cubic in the number of hidden states respectively. This work demonstrates a simple approach to reduce the computational and memory complexity of a large class of structured models. We show that by viewing the central inference step as a matrix-vector product and using a low-rank constraint, we can trade off model expressivity and speed via the rank. Experiments with neural parameterized structured models for language modeling, polyphonic music modeling, unsupervised grammar induction, and video modeling show that our approach matches the accuracy of standard models at large state spaces while providing practical speedups.
- Media > Music (0.61)
- Leisure & Entertainment (0.61)
Fast Inference via Hierarchical Speculative Decoding
Mohri, Clara, Kaplan, Haim, Schuster, Tal, Mansour, Yishay, Globerson, Amir
Transformer language models generate text autoregressively, making inference latency proportional to the number of tokens generated. Speculative decoding reduces this latency without sacrificing output quality, by leveraging a small draft model to propose tokens that the larger target model verifies in parallel. In practice, however, there may exist a set of potential draft models- ranging from faster but less inaccurate, to slower yet more reliable. We introduce Hierarchical Speculative Decoding (HSD), an algorithm that stacks these draft models into a hierarchy, where each model proposes tokens, and the next larger model verifies them in a single forward pass, until finally the target model verifies tokens. We derive an expression for the expected latency of any such hierarchy and show that selecting the latency-optimal hierarchy can be done in polynomial time. Empirically, HSD gives up to 1.2x speed-up over the best single-draft baseline, demonstrating the practicality of our algorithm in reducing generation latency beyond previous techniques.
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- Asia > Middle East > Israel > Tel Aviv District > Tel Aviv (0.04)
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- Europe > United Kingdom > England (0.04)
Demixing odors - fast inference in olfaction
The olfactory system faces a difficult inference problem: it has to determine what odors are present based on the distributed activation of its receptor neurons. Here we derive neural implementations of two approximate inference algorithms that could be used by the brain. One is a variational algorithm (which builds on the work of Beck.
Unscrambling disease progression at scale: fast inference of event permutations with optimal transport
Disease progression models infer group-level temporal trajectories of change in patients' features as a chronic degenerative condition plays out. They provide unique insight into disease biology and staging systems with individual-level clinical utility. Discrete models consider disease progression as a latent permutation of events, where each event corresponds to a feature becoming measurably abnormal. However, permutation inference using traditional maximum likelihood approaches becomes prohibitive due to combinatoric explosion, severely limiting model dimensionality and utility. Here we leverage ideas from optimal transport to model disease progression as a latent permutation matrix of events belonging to the Birkhoff polytope, facilitating fast inference via optimisation of the variational lower bound. This enables a factor of 1000 times faster inference than the current state of the art and, correspondingly, supports models with several orders of magnitude more features than the current state of the art can consider.
- Health & Medicine > Epidemiology (1.00)
- Health & Medicine > Therapeutic Area > Neurology > Alzheimer's Disease (0.40)
Block Transformer: Global-to-Local Language Modeling for Fast Inference
We introduce the Block Transformer which adopts hierarchical global-to-local modeling to autoregressive transformers to mitigate the inference bottlenecks associated with self-attention. Self-attention requires the key-value (KV) cache of all previous sequences to be retrieved from memory at every decoding step to retrieve context information, leading to two primary bottlenecks during batch inference. First, there is a significant delay in obtaining the first token, as the information of the entire prompt must first be processed to prefill the KV cache. Second, computation of subsequent tokens is bottlenecked by the high memory I/O demand of fetching the entire KV cache, which grows linearly with sequence length, incurring quadratic memory reads overall. We design the Block Transformer to strategically mitigate these costs, by incorporating coarsity and locality into an integrated global-to-local architecture.
Conditional Adapters: Parameter-efficient Transfer Learning with Fast Inference
We propose Conditional Adapter (CoDA), a parameter-efficient transfer learning method that also improves inference efficiency. CoDA generalizes beyond standard adapter approaches to enable a new way of balancing speed and accuracy using conditional computation.Starting with an existing dense pretrained model, CoDA adds sparse activation together with a small number of new parameters and a light-weight training phase.Our experiments demonstrate that the CoDA approach provides an unexpectedly efficient way to transfer knowledge.Across a variety of language, vision, and speech tasks, CoDA achieves a 2x to 8x inference speed-up compared to the state-of-the-art Adapter approaches with moderate to no accuracy loss and the same parameter efficiency.